Publications of the Group

Journal Article (9)

1.
Journal Article
Anetzberger, C.; Reiger, M.; Fekete, A.; Schell, U.; Stambrau, N.; Plener, L.; Kopka, J.; Schmitt-Kopplin, P.; Hilbi, H.; Jung, K.: Autoinducers act as biological timers in Vibrio harveyi. PLoS One 7 (10), p. e48310 (2012)
2.
Journal Article
Beisser, D.; Grohme, M. A.; Kopka, J.; Frohme, M.; Schill, R. O.; Hengherr, S.; Dandekar, T.; Klau, G. W.; Dittrich, M.; Muller, T.: Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology 6, p. 72 (2012)
3.
Journal Article
Calingacion, M. N.; Boualaphanh, C.; Daygon, V. D.; Anacleto, R.; Sackville Hamilton, R.; Biais, B.; Deborde, C.; Maucourt, M.; Moing, A.; Mumm, R. et al.; de Vos, R. C. H.; Erban, A.; Kopka, J.; Hansen, T. H.; Laursen, K. H.; Schjoerring, J. K.; Hall, R. D.; Fitzgerald, M. A.: A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8 (5), pp. 771 - 783 (2012)
4.
Journal Article
Dunn, W. B.; Erban, A.; Weber, R. J. M.; Creek, D. J.; Brown, M.; Breitling, R.; Hankemeier, T.; Goodacre, R.; Neumann, S.; Kopka, J. et al.; Viant, M. R.: Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics 9 (S1), pp. 44 - 66 (2012)
5.
Journal Article
Fuehrs, H.; Specht, A.; Erban, A.; Kopka, J.; Horst, W. J.: Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. Journal of Experimental Botany 63 (1), pp. 329 - 340 (2012)
6.
Journal Article
Hackenberg, C.; Huege, J.; Engelhardt, A.; Wittink, F.; Laue, M.; Matthijs, H. C.; Kopka, J.; Bauwe, H.; Hagemann, M.: Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158 (Pt 2), pp. 398 - 413 (2012)
7.
Journal Article
Rohloff, J.; Kopka, J.; Erban, A.; Winge, P.; Wilson, R. C.; Bones, A. M.; Davik, J.; Randall, S. K.; Alsheikh, M. K.: Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry). Phytochemistry 77, pp. 99 - 109 (2012)
8.
Journal Article
Sanchez, D. H.; Schwabe, F.; Erban, A.; Udvardi, M. K.; Kopka, J.: Comparative metabolomics of drought acclimation in model and forage legumes. Plant Cell and Environment 35 (1), pp. 136 - 149 (2012)
9.
Journal Article
Siahpoosh, M. R.; Sanchez, D. H.; Schlereth, A.; Scofield, G. N.; Furbank, R. T.; van Dongen, J. T.; Kopka, J.: Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309. Plant Science 182, pp. 101 - 111 (2012)

Book Chapter (5)

10.
Book Chapter
Huege, J.; Goetze, J.; Dethloff, F.; Junker, B.; Kopka, J.: Quantification of stable isotope label in metabolites via mass spectrometry. In: Methods in Molecular Biology, Vol. 1056, pp. 213 - 223. Humana Press Inc., Totowa, NJ, USA (2012)
11.
Book Chapter
Hummel, J.; Strehmel, N.; Boelling, C.; Schmidt, S.; Walther, D.; Kopka, J.: Mass spectral search and analysis using the Golm Metabolome Database. In: The Handbook of Plant Metabolomics, pp. 321 - 343 (Ed. Weckwerth, W.) (2012)
12.
Book Chapter
Lüdemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder: Preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses. In: Methods in Molecular Biology, Vol. 860, pp. 255 - 286 (Eds. Hardy, N. W.; Hall, R. D.). Springer, Berlin (2012)
13.
Book Chapter
Luedemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder-preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry (GC-MS) based metabolome analyses. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Ed., pp. 255 - 286 (Eds. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)
14.
Book Chapter
Schudoma, C.; Steinfath, M.; Sprenger, H.; van Dongen, J.; Hincha, D. K.; Zuther, E.; Geigenberger, P.; Kopka, J.; Koehl, K. I.; Walther, D.: Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Ed. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)
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